PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf1N1B4_4850 (440 amino acids)

SeqID: Pf1N1B4_4850 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    2.50
    OuterMembrane          2.50
    Periplasmic            2.50
    Extracellular          2.50
    Cytoplasmic            0.00
  Final Prediction:
    Unknown

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf1N1B4_4850
MQPSVKALLALTCMTLSSVSLGAQTLTIATVNNSDMIRMQKLSKTFEAEHPEIKLNWVVL
EENVLRQRLTTDIATQGGQFDVLTIGMYEAALWGAKGWLEPMKDLPASYALDDVFPSVRE
GLSVKGTLYALPFYAESSITYYRTDLFKDAGLTMPERPTWTQISEFASKLTNKDKEQYGI
CLRGKAGWGENMALITTVANAYGARWFDEQWKPEFIGPEWKNALNFYVDTMKKSGPPGAS
SNGFNENLALFNSGKCAIWVDASVAGSFVTDKTQSKVSDHVGFTYAPHETTDKGSAWLYS
WALAIPTSSKAKDAAKTFSAWATSKEYGALVAEKDGIANVPPGTRASTYTEAYMNAAPFA
KVTLESLKAADPSKPSLKPVPYIGIQLVTIPEFQAVGTQVGKLFSAALIGQTTVDQALTA
AQSTTEREMKRAGYPKVTAQ