PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf1N1B4_5104 (324 amino acids)

SeqID: Pf1N1B4_5104 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 54041946: Oligopeptide transport ATP-binding protein oppD]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    7.88
    Cytoplasmic            2.11
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    7.88

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf1N1B4_5104
VLKVEELSVIVRKGEHEVTLVDRLSFDLAEGEVLGLVGESGSGKTLACRGLMRLLPSPNL
RVEGTAVQLAGENLLHLDEAGMRRMRGRQLGMIFQNPSSHLDPLMRIGEQIGEGIRLHQG
ASRREARAQAIDVLRQVGIPDPQRRVDSYPHEFSGGMRQRAMIAVALGCNPNVLIADEPT
TALDVTVQAQILRLLLDLRDQRGLSIIMITHDLGVVAQTCDSIAVMYAGRLCEHGNKHEV
LAHPRHPYTAGLIDCQPATSHGHALLNTIAGQPPLLDALPQGCRFNPRCQQIGNRCTTLM
PGLQPVSHGHRIACHYPLAAGDHS