PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf1N1B4_5813 (291 amino acids)

SeqID: Pf1N1B4_5813 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 66774113: Dihydrodipicolinate synthase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf1N1B4_5813
MSSFQGIWVPIVTPFHDGAIDFAGLRRLVSHLLEKGVDGIVVCGTTGEAAALGKHEQLAV
LDAVLELVPPERVVMGLAGNNLAELLQFQSEILKRPLAGLLVPPPYYIRPSQAGLEAFFK
TVADASSVPVILYDIPYRTGIAFEQATLLRIVAHERIVAIKDCGGNPATTLALLSSGKVD
VLCGEDHQIFGALCLGATGAIAASAHVHPELFVALYQQIRDNQLAVGRATFFQLLPLIHS
LFIEPNPAPVKTALALEGLIRDELRSPMQRSSETTAVRLKEVLAVLENSNR

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory