PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf1N1B4_6037 (362 amino acids)

SeqID: Pf1N1B4_6037 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [2 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Periplasmic                   [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 6685241: Periplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            10.00
    Extracellular          0.00
    CytoplasmicMembrane    0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf1N1B4_6037
MKSAFNTFIPGALALLLLLPTALQAKEVETKQKLANVVILATGGTIAGAGASAANSATYQ
AAKVGIEQLIAGVPELSQLANVRGEQVMQIASESITNDNLLQLGRRVAELADSKDVDGIV
ITHGTDTLEETAYFLNLVEKTDKPIIVVGSMRPGTAMSADGMLNLYNAVAVASSKDARGK
GVLVTMNDEIQSGRDVSKMINIKTEAFKSAWGPLGMVVEGKSYWFRLPAKRHTMDSEFDI
KTIKSLADVEIAYSYGNVSDTAYKALAQSGAKAIIHAGTGNGSVSSRVVPALQALRKDGV
QIIRSSHVNAGGFVLRNAEQPDDKYDWVVANDLNPQKARILAMVALTKTNDSKELQRMFW
EY