PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf1N1B4_656 (405 amino acids)

SeqID: Pf1N1B4_656 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 584772: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf1N1B4_656
MAVGLGPLPTLHPVAGFELGIASAGIKRPGRKDVVVMRCAEGSTVAGVFTLNAFCAAPVI
LAKQRVQGPVRYLLTNTGNANAGTGEPGLAAAERTCAKLAELTGVDASLVLPYSTGVIGE
PLPVEKIEGALQAALDDLSVDNWEAAATGIMTTDTLPKGASRQFQHDGVTITVTGISKGA
GMIRPNMATMLGYIATDAKVSREVLQNLLLDGANKSFNRITIDGDTSTNDCCMLIATGQA
ALPEITEASGPLFALLKQAVFEVCMDVAQAIVRDGEGATKFVTVEVNGGGNHQECLDVGY
TVAHSPLIKTALFASDPNWGRILAAVGRAGVPNLDVSKIDVFLGDVCIASRGARSATYTE
AQGAAVMQQEEITIRIELGRGECSETIWTTDLSHEYVKINAEYRT

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory