PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf1N1B4_821 (802 amino acids)

SeqID: Pf1N1B4_821 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [6 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 118555: Alcohol dehydrogenase [acceptor] precursor]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.86
    Periplasmic            0.14
    Extracellular          0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane    9.86

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf1N1B4_821
MSADGAFSRSRLLPSLLGIVLLLMGLALLAGGIKLSMLGGSLYYLLAGIGLMLTGGLLLA
DRYAALSLYAVVLFASTVWALWEVGLDWWQLVPRLALLFALGIVMLLPWFRRPLRTGEFN
PVGTGVLSAAVVIAGIAALASLFTNPGEIKGELDRDAVPGMSNTAPAMPDGDWNSYGRSA
HGDRYSPLAQITPQNVNKLVPAWTYRTGDLPGPNDPGETTAENTPLKANGMLYVCTPHSQ
VIALDPDTGKELWRFDPKLSTQNAANFKGWAHMTCRGVTYHDDAAYASEQSPTGTANAPV
ASVCPRRIFLPTADTRLIALNADTGKMCEDFGNGGQVDLTTNIGEFTAGGYYSTSPPAVT
KDLVVIGGHVTDNVSIDEPSGVIRAFDVHTGKLVWNWDSGNPDDTTPIAEGKVYTRNSPN
MWSIFSVDEKLGMIYLPMGNQTPDQFGGARTPQSELHAAGLTALDIATGKVRWHFQFTHH
DLWDMDVGGQPTLMDLKTADGVKPAVLASTKQGSIYVLDRSNGQPIVPIKEIPVPQGAVE
GDYTSPTQPMSDLNFVPPTLKERDMWGVTPFDQMLCRIDFKSLRYDGMFTPPSLQGSIVY
PGNFGVFDWGGMSVDPVRQIAFVNPSYMAFKSKLIPAAEIAKQGPRVSETEGVQPNKGAP
YGVILEALLSPMGLPCQAPAWGYVAAVDLTTNKTIWMHKNGTVRDSSPVPIPLSMGVPSL
GGAFTTASGVAFLSGTLDQYLRAYDVKNGKQLWEGRLPAGAQTTPMTYTGKDGKQYVLVV
AGGHGSLGTKQGDYVIAYKLSE