PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf1N1B4_835 (549 amino acids)

SeqID: Pf1N1B4_835 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 7404478: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf1N1B4_835
MQDWQRSVIYQIYPKSFHSHAGNPTGDLLGVVAKLDYLHWLGVDCLWITPFLRSPQRDNG
YDISDYYAIDPSYGTMADCELLIAEAGKRGIKLMLDIVVNHTSIEHTWFQQARSSLDNPY
RDFYIWRDQPNNWESKFGGSAWEYEAQTGQYYLHLFDHTQADLNWDNPQVRAEVFKMMRF
WRDKGVGGFRLDVINLISKPADFPEDNSDGRRFYTDGPNVHEYLQQMHREVFEGHDLINV
GEMSSTSLEHCIRYSRPESKELSMTFNFHHLKVDYPNLQKWVRADFDFLALKRILSDWQT
GMQAGGGWNALFWCNHDQPRVVSRFGHDGEHRVVSAKMLGTALHFLQGTPFVYQGEELGM
TNPGFDHIDQYRDVETLNIFRLKREAGSSDVDNMAAIMQKSRDNGRTPMHWNTEPNAGFS
AVEPWIGVPANAAQINVAHQLDDPDSVLHHYRQLIALRRSETLMSDGVYRQLLPEHTQIW
AYVREGQGERLLVLNNFYGTPCEVELPPEVINESMVQSLVISNYPDCPPRNRQVFLRPYE
SFVLRLTDH