PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf6N2E2_1297 (289 amino acids)

SeqID: Pf6N2E2_1297 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf6N2E2_1297
MHVFVTGATGWVGASVVQDLIAAGHRVTGLARCEEKGATLAATGAKVISGTLDDLEILHG
AASAADAVIHTAFNHDFSRFAENAQQDRRAIETLGDALRGSDRPLLVTSGLFGLTRGASE
LEVVSPASPRKSEAAARDLAERGVRVATVRLAPSVHGLGDHGFVPILIRLARETGVSAYL
GDGVHCWSGVHRLDAARVYRLALEQGVTQSVYHAVADEAVPFKDIAQAIGRGLGLPVESR
EREHFGWFAHMAGANMAVSSAYTRALLGWMPSGPGLLDDLDQPGYYHAD

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory