PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf6N2E2_137 (511 amino acids)

SeqID: Pf6N2E2_137 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600548: glycolate oxidase subunit GlcD[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf6N2E2_137
MWDSSRPRGIDFMNILYDEHLDGPLPKVDKQALLQALQAQIPDLDILHQEEDLKPYECDG
LSAYRTTPLLVALPRRVEQVQALLKLCHGLDVPVVARGAGTGLSGGALPLESGVLLVMAR
FNQILHIDPDARTARLQPGVRNLAISQAAAPFGLYYAPDPSSQIACSIGGNVAENAGGVH
CLKYGLTVHNLLKLEILTIEGERLTLGSEALDSPGLDLLALFTGSEGLLGVITEVTVKLL
PRPQVAKVLLASFDSVDKAGRAVADIIAAGIIPGGLEMMDNLAIRAAEDFIHAGYPVEAE
AILLCELDGVEADVHDDCERVRQVLEQAGATEVRQARDEAERLRFWAGRKNAFPAVGRLA
PDYYCMDGTIPRRALPEVLQRIASLGAEHGLRVANVFHAGDGNMHPLILFDANQPGELER
AETLGGKILELCVQVGGSITGEHGVGREKINQMCTQFNSDELNLFHAVKAAFDPQGLLNP
GKNIPTLHRCAEFGAMHIHGGQLPFPELERF