PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf6N2E2_1467 (958 amino acids)

SeqID: Pf6N2E2_1467 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 16131905: formate dehydrogenase-H, selenopolypeptide subunit [Escherichia coli K12]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf6N2E2_1467
MINIFDPSTDIDLGTPARESDVQVSLTIDGREISVASGTSVMRAAALLGTTIPKLCATDS
LEAFGSCRMCLVEIDGMRGYPASCTTPVTEGMVVRTQTSKLATLRRNVMELYISDHPLDC
LTCPANGNCELQTVAGQVGLREVRYGYEGANHLAEAKDVSNPYFDYDPSKCIVCNRCVRA
CEEIQGTFALTITGRGFDSRVEAAGGDNFLDSECVSCGACVQACPTATLIDKSVVEIGQP
ERSVITTCAYCGVGCSFRAEMKGEQLVRMVPDKNGQANHGHSCVKGRFAWGYATHPDRIT
KPMIRKHINDPWQEVSWDEAVTYAASELRRIQLKYGRDSIGGITSSRCTNEETYLVQKLV
RTAFGNNNVDTCARVCHSPTGYGLKQTLGESAGTQNFDSVMKADVILVMGANPTDAHPVF
GSQLKRRLRQGARLIVIDPRRIDLVDSPHARAELHLQLRPGTNVAMLNALGHVIATEGLI
DQPFVDARCEAADFARWRDFVSQPENSPDVLGPVCGVPAEQIRAAARLYATGGNAAIYYG
LGVTEHSQGSTSVMGIANLAMATGNIGREGVGVNPLRGQNNVQGSCDMGSFPHELPGYRH
VSNETVRAQFEQAWNVTLQPDPGLRIPNMFEAALDGTFKALYCQGEDIAQSDPNTQHVTA
ALSALECVIVQDIFLNETAKFAHVFLPGSSFLEKDGTFTNAERRISRVRKVMDPLAGKAD
WEATIALADALGYKMHYNHPSQIMDEIARLTPTFSRVSYAELDRHGSLQWPCNDAAPDGT
PTMHIDQFVRGKGRFMLTGYVPTEEKVNSRYPLLLTTGRILSQYNVGAQTRRTDNVAWHE
EDRLEIHPTDAENRGIVDEDWVGIGSRAGQTVLRAKVTERVAPGVVYTTFHFPESGANVI
TTDNSDWATNCPEYKVTAVEIVRVSQPSEWQKRYQAFSDEQSRLLRERRHAEKAEVRR

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory