PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf6N2E2_1643 (547 amino acids)

SeqID: Pf6N2E2_1643 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 15597612: periplasmic trehalase precursor[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Periplasmic            9.44
    Cytoplasmic            0.33
    Extracellular          0.11
    CytoplasmicMembrane    0.06
    OuterMembrane          0.06
  Final Prediction:
    Periplasmic            9.44

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf6N2E2_1643
MMEQPMRPLYFTSLSFAALLCVACSSQPPATWSYADAQGRANLPPDQTYPELFEAVQREQ
VFTDQKHFVDALPNRDPAQIRADYLDRRNRDGFDIKAFVKDNFIESGEVESPAPKPGAPI
KEHIDSLWPVLSRSYRQVPAYSSLLPLPQPYVVPGGRFREMYYWDSYFTMLGLEQSGDEA
QVRQMTDNFAYMIDTYGHIPNGNRTYYLSRSQPPFFAYMVELQARIEGDQAYGRYLPQLQ
KEYAYWMEGAQSLKPGSAARHVVKLADGSVLNRYWDASPTPRQESWLQDVSTAERAPDRP
KEEVWRDLRAGAESGWDFSSRWLDDGQNLASIRTTAIVPVDLNSLIYHLENTIAKACETV
QNIPCVQAYGRRAELRQRAIEKHLWNADKGFYVDYDWQRNQPRQPLTAATLFPLYTGLAS
VEHANRTADAVRDGLLRPGGIATTQVSNGQQWDEPNGWAPLQWVAVEGLDRYQQTALAQQ
IGSRFLQQVENLYRKENKLVEKYDLSGRGDGGGGGEYELQDGFGWTNGVTLKLLGKYGAT
PPTLVGK

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory