PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf6N2E2_1812 (338 amino acids)

SeqID: Pf6N2E2_1812 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 6174923: Oligopeptide transport ATP-binding protein oppD]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    7.88
    Cytoplasmic            2.11
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    7.88

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf6N2E2_1812
MALLHVENLRVDIPMGNSPTPDDMLHAVRGLDFEVERGEMLCIVGESGCGKSLTSLALMD
LLPRKARRTASRLTLDGIDMLGQSERRMCDLRGNRLAMIFQEPMTSLNPAYSIGDQLSEV
LTQHRKVSRKDALARAAQMLEKVGISNAAERLRQYPHQLSGGLRQRVIIAMALMCEPDLI
IADEPTTALDVTIQAQILRLIRDIQKELGLAVIFITHDLGLVARIADRVAVMYAGEIVET
APARQLFENPQHPYTRGLLASIPIPGRTKPGEALGSIPGLVPSLVGEQQGCAFRNRCAQA
ITACAQDIPEIEQDGHMARCLFAAPAPAPIRLQERARS

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory