PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf6N2E2_1879 (511 amino acids)

SeqID: Pf6N2E2_1879 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 416605: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf6N2E2_1879
MEHSIGNWVGRSAARFGNKPAIIFEGKYWSFLDIDVQSSRLAASLESMGVKREDVVSIYS
PNSPEWIITYYAILKIGAIVNPLNTMLTAREAAFAIKNCGAVAVFSTSDKLLALQEHIGP
TEVISLISFDGITVAGMRHFNLLVDANVAVREYPVTGIQKDDISTIGYTSGTTGQPKGAV
LSHRCILTNVSMTATMHLRTASDIAVSALPLSHVYGNVVMNSAIAYGMTLVLHKTFDAEA
ILSSIQIYGATLLEGVPTMYIYLLNCPNLGAYDVSSLTRCTVGGQMMPYTAMENVERALG
CRLLELWGMTELGGLGTTHSLYGERRLGSIGVALPHLEARIAQLELDGDALPLGEIGELQ
IRGPVVMKHYLGRPDATAETKTDEGWLRTGDLARMDSEGFIYIVDRLKDMFITAGFNIYP
AELERVIAEHPSVAMVAVGSVLDEIKGELAKAYIVPKTGYEIDIQQIERHCRDRLAAYKV
PRLFQIVEDLPKTSSGKVMRRMLRQIFESKL

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory