PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf6N2E2_2118 (1114 amino acids)

SeqID: Pf6N2E2_2118 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 17367880: "Oligo-1,6-glucosidase"]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    8.46
    Cytoplasmic            1.33
    Periplasmic            0.21
    OuterMembrane          0.00
    Extracellular          0.00
  Final Prediction:
    CytoplasmicMembrane    8.46

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf6N2E2_2118
MAKKPRSATFIKDPLWYKDAVIYQVHVKSYFDSNNDGIGDFPGLIEKLDYIADLGVNTIW
LLPFYPSPRRDDGYDIAEYRGVSADYGTMADARRFIAEAHKRNLRVITELVINHTSDQHP
WFQRARKAKPGSKARDFYVWSDDDHKYDGTRIIFLDTEKSNWTWDPVAGQYFWHRFYSHQ
PDLNFDNPQVIKAVLSVMRYWLDMGIDGLRLDAIPYLIERDGTNNENLPETHDVLKLIRA
EIDANYPDRMLLAEANQWPEDTQLYFGDVDAQGMNGDECHMAFHFPLMPRMYMALAQEDR
FPITDILRQTPEIPANCQWAIFLRNHDELTLEMVTDKERDYLWNYYAADRRARINLGIRR
RLAPLVERDRRRVELLNSLLLSMPGTPTLYYGDEIGMGDNIYLGDRDGVRTPMQWSIDRN
GGFSRADPASLVLPPIMDPQYGYQSVNVETQAGDPHSLLNWTRRMLAVRKQSKAFGRGTL
KMLSPSNRRILAYTREYTGPDGKHEIILCVANVSRSAQAAELDLSTYAGMVPVEMLGGNA
FPPIGQLNFLLTLAPYGFYWFALATENQMPSWHVEPAQSLPDFTTLVLKKRLEELLEAPS
RTTLEQTILPSWLQNRRWFAGKDSAIEKVEIVYGVRFGDPQHPVLLSEIDVTSGGQTLRY
QLPFGLLAEDQVGAALPQQLALSRVRRVRQVGLITDAFSLESFVRAVLHSMQAATVLPFA
EGELRFEPTEGLAALNLGDEPEVRYLSAEQSNSSVVVGSSLVLKLIRKVASGVHPELEMS
AYLTAAGFGNISPLLGSVVRRDAQGEDALLMIAQGYLSNQGDAWEWTQNNLERALRDELA
DAVSEQEQHYNALGELKDFAGMLGQRLGEMHQVLAQATDDPDFAPQATNAKQAQAIGKDV
AAQVENALRLLKQNQGQLNPADQAMVARLLEHKKTVLAHVQALAGKAEGGLRIRVHGDLH
LGQVLVIKGDAYLIDFEGEPARPLHERRGKHSPYKDVSGVLRSFDYAAAMAIHLHTVDST
ADADAARQRVADRYLKEARQAFVEAYRLAAASLAHEWKDAEGEDAALALFGLEKAAYEVA
YEAENRPTWLPVPLHGLVGLLSGLQPFSDVAGPI