PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf6N2E2_2301 (913 amino acids)

SeqID: Pf6N2E2_2301 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 54294577: aconitate hydratase [Legionella pneumophila str. Lens]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf6N2E2_2301
MPSLDSLKTLKTLQVDARTYHYFSLPEAARSLGDLDKLPMSLKVLLENLLRWEDEKTVTG
TDLKALAGWLKERRSDREIQYRPARVLMQDFTGVPAVVDLAAMRAAVEKAGGDPQRINPL
SPVDLVIDHSVMVDKFASSQAFEQNVDIEMQRNGERYAFLRWGQSAFDNFSVVPPGTGIC
HQVNLEYLGRTVWTKEEDGRTYAFPDTLVGTDSHTTMINGLGVLGWGVGGIEAEAAMLGQ
PVSMLIPEVIGFKLTGKLREGITATDLVLTVTQMLRKKGVVGKFVEFYGDGLADLPLADR
ATIANMAPEYGATCGFFPVDEVTLDYLRLSGRPAETVKLVEAYCKAQGLWRLPGQEPVFT
DTLELDMGSVEASLAGPKRPQDRVSLPNVGQAFSDFLGLQVKPTSKEEGRLESEGGGGVA
VGNADQVGEAEYEFEGHTHRLKNGAVVIAAITSCTNTSNPSVMMAAGLLAKKAVEKGLTR
KPWVKSSLAPGSKVVTDYYKAAGLTEYLDKLGFDLVGYGCTTCIGNSGPLPEPIEKAIQK
ADLTVASVLSGNRNFEGRVHPLVKTNWLASPPLVVAYALAGTVRIDISSEPLGNDRDGKP
VYLRDVWPSSQEVATAVAQVNTSMFHKEYAAVFAGDEQWQAIEVPQAATYVWQDDSTYIQ
HPPFFDAIDGPPPAVKNVEGARILALLGDSVTTDHISPAGNIKADSPAGRYLREQGVEPR
DFNSYGSRRGNHQVMMRGTFANIRIRNEMLDGEEGGNTIYIPSGERMPIYDAAMLYQAVG
TPLVVIAGQEYGTGSSRDWAAKGTNLLGVKAVIAESFERIHRSNLVGMGVLPLQFKLDQN
RKSLNLTGKETLDILGLNDVELTPRMNLPLVITREDGSQERIEVLCRIDTLNEVEYFKAG
GILHYVLRQLIAG