PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf6N2E2_2539 (394 amino acids)

SeqID: Pf6N2E2_2539 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598209: fatty-acid oxidation complex beta-subunit[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf6N2E2_2539
MREVVIVDSVRTGLAKSFRGKFNMTRPDDMAAHCVDALLARNDINPASVEDCIVGAGSNE
GAQGYNIGRNVAVLSRLGTGTAGMTLNRFCSSGLQAIAIAANQIASGCSDIIVAGGVESI
SLTMKSVNTDHLINPLLKEQVPGIYFPMGQTAEIVARRYQVSREEQDRYALQSQQRTAKA
QAAGLFDDEIIPMAIKYRVEDKNTGAVQILDGVVDRDDCNRPDTTYESLAGLKPVFAEDG
SVTAGNSSQLSDGASMTLVISLEKALALGLKPKAFFRGFTVAGCEPDEMGIGPVFSVPKL
LKAKGLQIADIDLWELNEAFASQCLYSRNRLEIDPGKYNVNGGSISIGHPFGMTGSRQVG
HLVRELQRRNLRYGVVTMCVGGGMGATGLFEMVR

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory