PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf6N2E2_2768 (330 amino acids)

SeqID: Pf6N2E2_2768 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Periplasmic                   [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 11128402: Periplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            10.00
    Extracellular          0.00
    CytoplasmicMembrane    0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf6N2E2_2768
MNLSLRKVALAAGCLMFAGQLLAADPSKEPKRPECIAPASPGGGFDLTCKLAQSALVNQK
LLTKPMRVTYMPGGVGAVAYNAVVAQRPADAGTLVAWSSGSLLNLAQGKFGRFDESAVRW
LAAVGTSYGAIAVKSDSPYKNLDDLVQALKKDPGSVVIGSGGTVGSQDWMQTALIAKAAG
INPRDLRYVALEGGGEIATALLGGHIQVGSTDISDSMPHIQSGDMRLLAVFAEKRIDEPE
MKDIPTAKEQGYDIVWPVVRGFYLGPKVSDEDYAWWKDAFDKLLASEEFAKLRDQRELFP
FAMTGPELDAYVKKQVADYKVLAKEFGLIQ