PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf6N2E2_2837 (286 amino acids)

SeqID: Pf6N2E2_2837 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 3122155: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf6N2E2_2837
MAEILSLHDAVKQFVNDGDTVALEGFTHLIPTAAGHEIIRQGKKDLTLVRMTPDLIYDQL
IGAGCARKLIFSWGGNPGVGSLHRLRDAVEKQWPHPLEIEEHSHADLANAYVAGASGLPF
AVLRAYAGSDLPKVNPLIKSVTCPFTGEVLAAVPSVRPDITVIHAQKADRKGNVLLWGIL
GVQKEAVLAAKRCIVTVEEIVDDLNAPMNACVLPTWALSAVCLVPGGAHPSYAHGYTERD
NRFYQAWDPIARDRETFTAWINEYIHGTKDFSEFQARLAAASQVKP

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory