PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf6N2E2_3339 (954 amino acids)

SeqID: Pf6N2E2_3339 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 2507168: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf6N2E2_3339
MLELTLEQISMAQTAVDKDAALQLLADKLVADGLVAEGYLAGLQAREAQGSTFLGQGIAI
PHGTPQTRDLVHSTGVRLLQFPEGVDWGDGQIVYLAIGIAAKSDEHLRLLQLLTRALGET
DLGQALRRAGSAEALLKLLQGAPQELALDAQMIGLGVSADDFEELVWRGARLLRQADCVS
NGFAGVLQQVDALPLGDGLWWLHSEQTVKRPGLAFVTPDKPIRYLGQPLSGLFCLASLGE
AHQALLERLCALLIEGRGHELGRATSSRKVLEVLGGELPADWPSARIGLANAHGLHARPA
KILAQLAKSFEGEIRVRIVDGQDSAVSAKSLSKLLSLGARRGQVLEFIAEPSIANDALPA
LLAAIEEGLGEEVEPLPPPSAPRETVMAEVATVMLAPESGSLIQAVAAAPGIAIGPAHIQ
VLQAIDYPLRGESAAIERERLQNALNQVRRDIQGLIERAKAKAIREIFITHQEMLDDPEL
SDEVDTRLKLGESAQAAWMGVVEAAAKEQEALQDALLAERAADLRDVGRRVLAQLCGVET
PNEPDQPYILVMDEVGPSDVARLDPTRVAGILTARGGATAHSAIVARALGIPALVGAGAA
VLLLAPGTSLLLDGQRGRLHVDPDAATLQRAKEERDTREQRLKVAAEQRHEPALTRDGHA
VEVFANIGESAGVAGAVEQGAEGIGLLRTELIFMAHSQAPDEATQEAEYRKVLDGLAGRP
LVVRTLDVGGDKPLPYWPIAKEENPFLGVRGIRLTLQRPQVMEAQLRALLRSADNRPLRI
MFPMVGSVDEWRQARAMTERLRQEIPVADLQLGIMIEVPSAALLAPVLAKEVDFFSVGTN
DLTQYTLAIDRGHPTLSAQADGLHPAVLQLIDITVRAAHAHGKWVGVCGELAADPLAVPV
LVGLGVDELSVSARSIAEVKARVRELSLAQVQTLAQEALAVGSADDVRALVEAL