PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf6N2E2_3403 (475 amino acids)

SeqID: Pf6N2E2_3403 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599679: |Glu-tRNA(Gln) amidotransferase subunit A|5013974 - 5015428]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf6N2E2_3403
MNIMDRTASQSIGQLRQALESGTLTSESLVGAQLERIERFNGQLNAYVEAYPQRALGAAI
AADRQRAAGVHLGPLHGIPIAIKDLFEIDGKAITGGSLAQTPRISRLTATAVQRLERAGA
IIMGKTHTVEFAFGGWGTNAVMGTPWNPWDHEVHRAPGGSSSGSAVAVAGGLASAALGTD
TGGSVRIPAGMCGLVGLKTTRGLVSRHGLIELCPSLDSVGPITHTVEDAAWMLDALLGPD
PLDPVSAKSPVFSAAAGLNLPVAGLRIWVLPQTEREHIAPGVLAAYDQGLEQLAALGMHL
VEQPLPTSLEQCMRVAGGLMSAEGYASLGSLFERDDLRFDPHVQRRVLSGRAIDAAAYIH
LHNQRRAARQAMDEAMSQVDACAFPTNAIGSVPLSQVDEYGTPLALLGRFANLLNLCSVA
LPVGFDEQRMPVSMQIVGRAFAEPLVLRIAHAYQQVSDWHQRRPVGWDLSDRVVA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory