PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf6N2E2_3675 (545 amino acids)

SeqID: Pf6N2E2_3675 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 129056: Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex (E2) (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex)]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf6N2E2_3675
VSELIRVPDIGSGEGEVIELFVKVGDRIEADQSILTLESDKASMEVPAPKAGVIKSLKVK
LGDRLKEGDELLELEVEGAAAAPEAAAPAAAPAAEKPAAAPAAEAAPAPAAAPAAATVQD
IHVPDIGSSGKAKIIEVLVKAGDTVEADQSLITLESDKASMEIPSPAAGVVESVEIKLED
EVGTGDLILKLKVAGAAAPAAPAQAAAPAAKTEAAPAPAAAAPAAKAEAAPAPAAAPAPS
GAKVHAGPAVRQLAREFGVELSAVGPSGPHGRVLKEDVQAYVKAMMQKAKNAPAEGATGG
AGIPPIPAVDFSRFGETEEVAMTRLMQIGASSLHRSWLNIPHVTQFDQADITELEAFRVA
QKAVAEKAGVKLTVLPLLLKACAHLLKELPDFNASLAPSGKAVIRKKYVHIGFAVDTPEG
LLVPVIRNVDQKSLLQLAAEAAALAEKARNKKLTADDMQGACFTISSLGHIGGTGFTPIV
NAPEVAILGVSKATIQPVWDGKAFQPKLMLPLSLSYDHRVINGAAAARFTKRLSDLLGDI
RTILL

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory