PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf6N2E2_3707 (457 amino acids)

SeqID: Pf6N2E2_3707 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599679: |Glu-tRNA(Gln) amidotransferase subunit A|5013974 - 5015428]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    8.46
    Cytoplasmic            1.33
    Periplasmic            0.21
    OuterMembrane          0.00
    Extracellular          0.00
  Final Prediction:
    CytoplasmicMembrane    8.46

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf6N2E2_3707
MPLPMNAFSSPDAIALAEAFASGRTDPVQVLEQALEQASRAEHVFVSLTEARARREAQAS
AARWRAGQPLSGFDGVPLAWKDLFDVAGSVTTAAAAVRRDAPPALLDAASVSLLSRAGMV
CLGKTNLSEFAYSGLGLNPHFGTPVNPFSDAQPRIPGGSSSGSAVAVAAGIVPIAMGTDT
AGSIRVPAAFNALVGFRASSRRHSRDGVFPLAHSIDSIGPLTRSVRDAWMIDELLQGRDP
RQAPPVRSLAGQRFWVEQAVLEDASVEAAVRANVLAGVQALRTAGALVEIRPLPAFQASL
ALIRDHGWLGAAEAFALHEALLDSADAERLDPRVRRRLEAARPMTASQVLKLYDARSALQ
RQLVEELDGAVLITPTVAHVAPPLAPLEADDELFVRTNLATLRLTMPGSLLDMPSVNLPS
GRDSQGLPTGLLLSVPQGEDARLLRVARSVEATLANS

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory