PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf6N2E2_3800 (507 amino acids)

SeqID: Pf6N2E2_3800 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600291: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf6N2E2_3800
MSQAEKIVIADAPLRWQDVVAVARFGAELELSAQAWARIDNAQAIVQRIVESGERAYGVN
TGLGALCNVSLKDEQLSQLSRNTLLSHACGVGAPLSDEQTRAIICAAILNYSQGKSGIHR
RVVEALLALLNRGITPQVPSQGSVGYLTHMAHISIALLGVGQVSYRGQIMPAQQALAAEG
LQPVQLGAKDGLCLVNGTPCMTGLSCLALADATRLVQWADVIGAMSFEAQRGQIAAFDAE
IIALKPHPGMQQVGVNLRALLDGSEVIASSLGIRTQDALSIRSIPQVHGAARDQLAHARQ
QIETELNAATDNPLLLGTPEHFRVMSQANPHGQSVAMAADLLAIAMAEIGSIAERRLDRL
INPHVSGLPAFLVANPGVNSGMMIVQYVAASLCAENKQLAQPAVLDNFVTSGLQEDHLSM
GTNAALKLHRALENCTQILAIEYLLAAQAFEFLKAQRFGTGTDIAWKLLRERVPAYDQDR
WLAPDIASAAGLLKDPSVLHRVLPNLN

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory