PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf6N2E2_3808 (454 amino acids)

SeqID: Pf6N2E2_3808 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600299: conserved hypothetical protein[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf6N2E2_3808
MSAFFAERALLPSGWAHDVRLEVDAEGVLTHIQAGSHADGAERLGGPLLPGMPNLHSHAF
QRAMAGLAEVAGNPNDSFWTWRDLMYRLVGKISPDQLGIIARQLYIEMLKAGYTSVAEFH
YVHHDTDGAPYADPAELALRISHAASAAGIGLTLLPVLYSHSGFGGQAPNDGQRRFINST
ENYLKLQSRLQPILAGQPSQALGLCFHSLRAVTPGQIQDVLAASDRECPVHIHIAEQQKE
VDDCLSWSGARPLQWLYENTEVDQRWCLVHATHANAQEVSLMARSRAIAGLCLTTEANLG
DGIFPAVDFLAQGGRLGIGSDSHVSLSVVEELRWLEYGQRLRDQRRNRLYRADQPMVGRT
LFDAALEGGAQALGQPIGALDIGKRADWLVLDGSDPYLATAQGDAILNRWLFAGGDRQVR
DVMVGGRWVVRDGRHAGEEESARAFTQVLRELLG