PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf6N2E2_3822 (187 amino acids)

SeqID: Pf6N2E2_3822 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 15600377: hypothetical protein[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            9.76
    Extracellular          0.11
    CytoplasmicMembrane    0.06
    OuterMembrane          0.06
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            9.76

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf6N2E2_3822
MTLRLKLCLALSAALLASTAEAASARAPEALTPLLNAIGERLALGDQVALSKWDSHKPVE
DRQREREVIAAAVAQAPAYKLSGETVEAFFAAQIEANKMVQYINLSDWALEGKAPDLPRP
DLVGEIRPQLDRLQKRLLQQLADFAPYRTDPQCPQWLARATHHNKQHPVHRLALIRATGE
LCISPKA