PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf6N2E2_4087 (334 amino acids)

SeqID: Pf6N2E2_4087 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 16129721: cytoplasmic L-asparaginase I [Escherichia coli K12]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf6N2E2_4087
MNGSTYPAAQHVMVLYTGGTIGMQASAHGLAPASGFEARMRDYLHSQPELVVPQWRFREM
SPLIDSANMTPAYWQQLREAVVDAVDVQGCDSVLILHGTDTLAYSAAAMSFQLLGLHARV
CFTGSMLPAGVIDSDAWENLSGALVALGQGLAPGVHLYFHGELLAPTRCAKVRSFGRHPF
KRLERQGGGLKASSLPAQLNYNQPKQLANIAALPLFPGISAEILDGLLGSGIQGLVLECY
GSGTGPSDNPAFLASLERARDSGVVIVAVTQCHEGGVELDVYEAGSRLRGVGVLSGGGMT
REAAFGKLQALIGAGLPVEEVRRLVELDLCGELA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory