PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf6N2E2_4241 (483 amino acids)

SeqID: Pf6N2E2_4241 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf6N2E2_4241
VLIPVILSGGAGTRLWPVSREGHPKPFMLLPDGQSLLGKTYRRAAGLFDGRGDIVTVTNR
EYYFQSRDHYQSAHLERHRGHFVLEPTGRNTAPAIATAALAVQALHGDDPILVVMPADHL
IQDEAAFQTAVAHAVELAKNGHLVTFGVLPSTPETGFGYIERGKPLDTKGAAKVVRFVEK
PDLQTATQYLESGRFLWNSGMFCFSVKTLLAELQAHAPELLEQARTCVTASTAVETSGCV
QQELSAAHFAEMPDISIDYALMERSANVVVIPAAFDWSDIGSWSAVAGLVPADAQNNRAT
GEALFIDSQNNFVQSDGRLVAALGVEHLIIIDTADAVLVAHADRAQDVRRVARQLKDKDH
EAYRLHRTVSRPWGSYTVLEEGPRFKIKRIVVKPGASLSLQMHHHRNEHWVVVEGMAKVT
NNGSGSHLVAKNESTFIPAGHKHRLENPGVIDLVIIEVQSGEYLGEDDIVRFEDHYGRAD
SCC