PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf6N2E2_4822 (493 amino acids)

SeqID: Pf6N2E2_4822 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 16129225: component I of anthranilate synthase [Escherichia coli K12]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf6N2E2_4822
MNREEFLRLAAAGYNRIPLACETLADFDTPLSIYLKLADQPNSYLLESVQGGEKWGRYSI
IGLPCRTVLRVHDHRVSVTHDGVEIESLEVEDPLAFVETFKARYNVPTIPGLPRFNGGLV
GYFGYDCVRYVEKRLGTCPNPDPLGVPDILLMVSDAVVVFDNLAGKMHAIVLADPSQEDA
YEQGQQSLQALLEKLRQPIAPRPGLDFSKQSATDPVFRSSFTQDDYERAVDTIKEYILAG
DCMQVVPSQRMSIDFKAAPIDLYRALRCFNPTPYMYFFNFGDFHVVGSSPEVLVRVEDNL
ITVRPIAGTRPRGATEEADRALEEDLLSDDKEIAEHLMLIDLGRNDTGRVSEIGSVKLTE
KMVIERYSNVMHIVSNVTGQLKAGLTAMDALRAILPAGTLSGAPKIRAMEIIDELEPVKR
GVYGGAVGYFAWNGNMDTAIAIRTAVIKNGELHVQAGGGIVADSVPALEWEETLNKRRAM
FRAVALAEQTSND

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory