PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf6N2E2_5667 (341 amino acids)

SeqID: Pf6N2E2_5667 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15596094: arginine/ornithine succinyltransferase AII subunit[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf6N2E2_5667
MIVRPVRSSDLPALIALARSTGTGLTTLPANEERLAHRVGWAEKTFRGEAGRGDADYLFV
LEDDDGRVVGISAIAGAVGLREPWYNFRVGLTVSASQELNIYREIPTLFLANDLTGNSEL
CSLFLHADFRSGLNGRMLAKARLLFIAEFPQLFGNKIIAEMRGMSDDKGRSPFWESLGRH
FFKMEFSQADYLTGVGNKAFIAELMPKFPLYTCFLSEDARAVIGQVHPDTEPALSMLKSE
GFSYQGYVDIFDAGPAVECETGKIRAIRDSQALVLAIGTPGDDATPFIIHNRKREDCRIT
AAPARLAAGTLVVDPLTAKRLQLNAGDQVRAVALSAARESK

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory