PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf6N2E2_614 (391 amino acids)

SeqID: Pf6N2E2_614 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 15599399: periplasmic gluconolactonase, PpgL[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Periplasmic            6.53
    CytoplasmicMembrane    3.39
    Cytoplasmic            0.08
    Extracellular          0.01
    OuterMembrane          0.00
  Final Prediction:
    Unknown (This protein may have multiple localization sites.)

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf6N2E2_614
MKMRSLWPLLMAGSLGAMGVQADTDERHQLLVGSYTAGQSQGIYRLQFDSRTGQLDANPL
QVIKTDNPSWLTLSKDMTRLFVVNENGPGQKDPVGKVSSYAIDPKTHELSLINQVQSLGN
EPTHSSLSGDGRHLLVSNYSVVEDPGGTLAVLPVGADGKLAPVVQLSSHQPSKVNPERQM
SAHVHAAVSSPDGKYVFANDLGADKVFIYRYDPKANPELPLTAADPAFVQLPPGSGPRHL
LFSADGKHAWLTMEMSAQVAVFDYQDGRLTQRQLVDLAAGKPQPGRAAAALHASRDGKFL
YVSNRGTTNEVLVFAIDPAAGTLKELQRRSVEGDHPREFSLDPSGRFLLIANQKSNQIVV
IERDPKTGLLGKTVQKMPMDAPSDLKFMVRQ

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory