PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf6N2E2_66 (360 amino acids)

SeqID: Pf6N2E2_66 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 12644451: 3-isopropylmalate dehydrogenase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf6N2E2_66
MSKQILILPGDGIGPEIMAEAVKVLELANDKYGLGFELSHDVIGGAAIDKHGVPLADETL
DRARAADAVLLGAVGGPKWDKIERDIRPERGLLKIRAQLGLFGNLRPAILYPQLADASSL
KPEIVSGLDILIVRELTGGIYFGAPRGTRELENGERQAYDTLPYSESEIRRIARVGFDMA
RVRGKKLCSVDKANVLASSQLWREVVEQVAKDYPDIELSHMYVDNAAMQLVRAPKQFDVI
VTDNMFGDILSDEASMLTGSIGMLPSASLDANNKGMYEPCHGSAPDIAGQGIANPLATIL
SVSMMLRYSFNLNDAADAIEKAVSVVLDQGLRTGDIWSQGCTKVGTQQMGDAVVAALRNL

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory