PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf6N2E2_993 (501 amino acids)

SeqID: Pf6N2E2_993 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 7404442: Ribose import ATP-binding protein rbsA]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    7.88
    Cytoplasmic            2.11
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    7.88

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf6N2E2_993
MQSQKIVQVTGLHKTYGGITALKSIDFELNAGEIHGLCGENGAGKSTLVKILGGLVQPTE
GQILFDGAVLRPGRRTDPSCISIVHQELSIIPALSVLDNVLMGNAQVGRLYLRGRFKNDV
RRQLDSIGLSHVTLDQSASELSLAERQLVEISRCVLHGAKVLILDEPTATLAESEIARVF
TAVRWLRDQGTTVVFISHRLNEVFDLTDRITIFRSGERVLTAPTSEMTTESLVLAMVGHE
VERRSTLDAINPHAHLIRLKLDRFGVPNACQSLDLEVPAGEILGVVGQLGSGADRLIEAI
AGVRSHTGNLSIDGQQVDIQSPRKAISQGIAYVPEDRAGKGVFLEANIGQNSTASILFQF
SRFGRLERSQERDAALDLMKRFTIDTTRIGSKVSSLSGGNQQKVAMAKAAAISPKILILN
EPTRGVDVGARAEIYAQLRSMAATGLTVIFFSTDFEEVLELADRVITVFRGETVNDRVIE
HCSMTSILMDILHGRGEEKIA