PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PfGW456L13_1086 (392 amino acids)

SeqID: PfGW456L13_1086 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 130990: Glycine betaine/L-proline transport ATP-binding protein proV]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.99
    Cytoplasmic            0.01
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    9.99

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PfGW456L13_1086
MSIIRFDNVDVIFSKDPREALKLLDQGMTRNEILKKTGQIVGVEKASLDIEKGEICVLMG
LSGSGKSSLLRCINGLNTVSRGKLFVEHEGKQIDIASCTPAELKMMRTKRIAMVFQKFAL
MPWLTVRENISFGLEMQGRPEKERRKLVDDKLELVGLTQWRNKKPNELSGGMQQRVGLAR
ALAMDADILLMDEPFSALDPLIRQGLQDELLELQRKLSKTIVFVSHDLDEALKLGSRIAI
MKDGRIIQYSVPEEIVLNPADDYVRTFVAHTNPLNVLCGRSLMRTLDNCKRINGSVCLDP
GGDSWLDLAEGNTIKGARQNGSALDLQNWVPGQAVEGLGRRPTLVDSNIGMRDALQIRYQ
TGNKLVLHDNNHVVGILGDSELYHALLGKNLG