PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PfGW456L13_1173 (784 amino acids)

SeqID: PfGW456L13_1173 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [6 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 118555: Alcohol dehydrogenase [acceptor] precursor]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.86
    Periplasmic            0.14
    Extracellular          0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane    9.86

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PfGW456L13_1173
MNNSGAAAGSKWLLAGLGVLIALIGLGLAGGGGYLIALGGSWYFLLMGLAMLASGLMIAR
RKPLGAWLYGVALVLTAIWAVWDAGLEYWPLVSRILTFAVIGLVVALIYPTLVRASGATG
GRGAYGLAGILGVAVVATMAYMFVPTHVVKATTEPAVTPVTPGTEQKDWAHWGNTTAGNR
FAALDQINKGNIDKLQVAWTFRTGDIPQSTGAGAEDQNTPLQIGDTVYTCTAYGKVFALD
ADTGAQRWKFDPQGTAPNWQRCRGLGYSETPVSSDNQPTACTKRLFLPTGDARLIAINAD
TGKPCEEFGNKGTVDLTTDMGEVKPGYYQQTSTPLVAGDVVIVGGRVADNYSTGEPPGVV
RAYDVRSGELVWAWDPGNPNTTKRPPAGETYTRGTPNVWSAMSYDAKLGLVYLPTGNATP
DFFGGQRTEFDDKWSSSIVAIDVKTGQVRWHFQTTHHDLWDFDLPAQPLLYDVPDDKGGT
QPALAQVTKQGEIFLLNRETGVPIARVEERPVPQGKVPGERYSPTQPFSVDMPSIGNKTL
TESDMWGATPFDQLMCRIQFKGMRHEGVYTPPGMDRALQFPGSLGGMNWGSVSVDPNTHY
MFINDMRLGLANYMIPRDKIGAGASGIEMGVVPQEGTPFGAMRERFLSAVGIPCQKPPFG
TMSAIDLKTHKLVWQVPVGTVQDTGPLGIRMHLPIPIGMPTLGASLATQSGLLFFAGTQD
FYLRAFDTGNGNEIWKSRLPVGSQSGPMTYVSPKTGRQYILLTVGGARQSTDRGDYVIAY
ALPK