PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PfGW456L13_126 (427 amino acids)

SeqID: PfGW456L13_126 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597972: conserved hypothetical protein[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PfGW456L13_126
MPLREECLWEKLTPQRPDNSALKGEVTVDVCVIGAGFTGLSAAVHLLEQGKTVCVLEAHR
AGHGGSGRNVGLVNAGMWIPPDEIEAGFGEAVGSQLNRMLGAAPSLVFSLVDKYNIDCQL
RREGTLHMAHNARGEADLRSREEQWKRRGAPVELLTGQACEQATGTKKIAAALLDRRAGT
LNPMAYTTGLAKAAIGLGGQLFDHSPVTRLERQGQRWSVQTAQGSVMAEKVVIASNAYTE
GDWTELRRNFFPGYYYQVASVPLTEEAARQILPGGQGSWDTRQVLSSIRRDKDGRLLLGS
LGNGNQKPAWFLKAWADRVQQHYFPYLKPVEWECTWTGCIAFTPDHLMRLFEPAPGLVAV
TGYNGRGVTTGTVVGKAFADYLCNGNPQALPIPFAPMQPLAGVGLRSCLYEAGFSLYHAG
QCLRIVI