PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PfGW456L13_1698 (343 amino acids)

SeqID: PfGW456L13_1698 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 3182887: Periplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            9.76
    Extracellular          0.11
    CytoplasmicMembrane    0.06
    OuterMembrane          0.06
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            9.76

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PfGW456L13_1698
MKMLKSTLAIVTAAAVLGVSGFAQAGATLDAVMKKGFVQCGVSDGLPGFSVPDSTGKIVG
IDADYCRAVAAAVFGDATKVKFSQLNAKERFTALQSGEIDILSRNTTMTSSRDAGMGLKF
PGFITYYDGIGFLVNNKLGVKSAKELDGATICIQAGTTTELNVSDYFRGNGLKYTPITFD
TSDESAKSLESGRCDVLTSDKSQLFAQRSKLASPKDYVVLPETISKEPLGPVVRNGDDEW
LAIVRWTGYAMLNAEEAGITSKNVEAEAKGTKNPDVARLLGTDGEYGKDLKVKKDWVVQI
IKQVGNYGEVFEKNLGKSTPLEIDRGLNALWNAGGIQYAPPVR