PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PfGW456L13_1975 (448 amino acids)

SeqID: PfGW456L13_1975 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15596096: succinylarginine dihydrolase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PfGW456L13_1975
MKSYEVNFDGLVGPTHNYGGLSYGNVASQSNSQQSSNPKEAALQGLAKMKALMEMGFQQG
VLAPQERPDVAALRRLGFGGTDAQVIERAAKEAMPLLVASCSASSMWVANAATVSPSADT
ADGRVHFTAANLNCKYHRSIEHPTTSRVLGAMFADQKHFAHHAALPAVAQFGDEGAANHT
RFCREYGEAGVEFFVFGRSAFDTRYPAPQKYPARQTLEASQAVARLHGLSDDGVVYAQQN
PSVIDQGVFHNDVIAVGNGEVLFYHEDAFLETEKMLAELQSKLAKVGGKFQSVCVPRSAV
SVEDAVRSYLFNSQLLSRPDGSMLLIVPEECRGNERVWQYLQGLTSSGGLIREVKVFDLK
QSMQNGGGPACLRLRVALNETELAAVNPGVIMTAPLYGTLTEWVEKHYRDRMTENDLADP
QLLLECRTALDELTQILKLGAVYPFQIN