PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PfGW456L13_2130 (436 amino acids)

SeqID: PfGW456L13_2130 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [12 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          CytoplasmicMembrane           [matched PS50850: MFS Profile - Cytoplasmic Membrane ]
    SCL-BLAST-        CytoplasmicMembrane           [matched 76363492: D-galactonate transporter]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PfGW456L13_2130
MQPQTLTGQASLVTPSRKRFFIMVLLFITVVINYLDRSNLSIAAPALTSDLGIDPIHVGL
IFSAFGWTYAAMQIPGGWLVDRVPPRILYSVALLLWSVATVMLGFAGSFIALFVLRMAVG
ALEAPAYPINSRVVTTWFPERERATAIGFYTSGQFVGLAFLTPVLAWLQHEFGWHMVFVT
TGAVGIVWAVIWYAVYREPRDFKGANDAEIDLIREGGGLVDIQAEQARVKAKFSWTDLGI
VLTKRKLWGIYLGQFCLNSTLWFFLTWFPTYLVKYRGMDFIKSGLLASLPFLAAFIGVLC
SGFFSDFLIRRGYTVGFARKLPIISGLLISTSIIGANFVESTPLVIAFLALAFFGNGLAS
ITWSLVSTLAPARLLGLTGGVFNFIGNLSAIATPIVIGFLATGDSFAPAITYISVLALIG
ALSYILLVGKVERIKL