PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PfGW456L13_2132 (350 amino acids)

SeqID: PfGW456L13_2132 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 2492771: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PfGW456L13_2132
MYTAIGYAAQSATTPLAPVKFERRSPRPDDVAIEILYCGVCHSDIHQARNEWGIAVYPLM
PGHEIVGKVTAVGASVTQHKVGDLVGVGCMVDSCRSCEACQANLEQYCLEGPTMTYATPD
RVDGSNTMGGYSDSIVVSEHFVVRIPEKLPLASAAPILCAGITTYSPLKHYGVKAGDKVG
ILGMGGLGHMGIKFAKAMGAEVTLFTRSASKAEEARRQGADHVIVSTDDAQMQAAAGHFD
FLLDTIPVQHDLNPYLDTLRFDGVHILVGLIEPVEPPVHAAKLVLGRRVLAGSLIGGIAE
TQEVLDFCAEHNITCDIEMLDIRQINEAYARMIAGDVKYRFVIDMATLKI