PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PfGW456L13_2439 (762 amino acids)

SeqID: PfGW456L13_2439 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 1168434: Copper amine oxidase precursor]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            9.76
    Extracellular          0.11
    CytoplasmicMembrane    0.06
    OuterMembrane          0.06
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            9.76

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PfGW456L13_2439
MFSPKASPKRTPLARLALAITLSTLGLPFWAGNAQAHGGHAEMVPLQAGLEEFGATVKWD
DYANLFTIAKDGVYLKVKPDSKVAMLNGKRIELTVPVVFKDHTAFMSKDFINQVFQSGLD
KTFVVETRPNPLNPLSAAEITTAVDIVKKSENYKPGFRFTEVSVKEPPKDQVWNFALTGQ
NVAQPRQASIVVLDGKHVIEAQVDLDTKELKSWKPIEGAHGMVLLDDFATVQTAVETSPE
YAQALAKRGINDVKKVVATPLTVGFFDGKDGLAQDKRLLKIVSYLNTGDGNYWAHPIEGL
VAIVDLEQKKLIKIEDDALIPVPMNPTPYDGRGRQGVAVKPLEIIEPEGKNYTISGNSIH
WQNWDFHVRLDSRVGPILSTVTYDDKGKKRKIMYEGSLGGMIVPYGDPDVGWYFKAYLDS
GDYGMGTLTSPIARGKDAPQNAVLLDATIADYTGTPTAIPRAMAVFERYAGPEYKHQEMG
QPNLSTERRELVVRWISTVGNYDYIFDWVFQQNGTIGIDAGATGIEAVKGVKSKTMHEDT
AREDTRYGTLLDHNIVGTTHQHIYNFRLDMDVDGEQNSLVEVNPVVLPNDRGGPRTSTMQ
TETKVVGNEQQAAQKFDPSTVRLLTNFSKENKVGNPVSYQLIPYAGGTHPVAKGANFGKD
EWLYHRLSFMDKQLWVTQYNPEEKYPEGKYPNRSDKDSGLGQFTQDNHSIENTDDVVWLT
TGTTHIARAEEWPIMPTEWVHVLLKPWNFFDETPTLNLSSPK

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory