PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PfGW456L13_2521 (526 amino acids)

SeqID: PfGW456L13_2521 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 416605: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            4.99
    CytoplasmicMembrane    4.90
    Extracellular          0.10
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    Unknown (This protein may have multiple localization sites.)

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PfGW456L13_2521
MPPVATALTIAQLFANAAQAYGDRPAIEDADHTISYRQLDQLRRQAARALLALDVQVGDR
VAIWAPNVWEWIVAAGALQSVGAALVPLNTRMKGSEAGYILRESGTCVLFAIGEFLGADY
PGMLTPEDLPALRHIVSVRGANSGTLAWERFMDLAADVPQLALRTREQSVGPQALSDVLF
TSGTTGKPKGVMTSHGQNLRIVRDWSDIVGLREGDRYLIVNPFFHSFGYKAGWLAALMRG
CTLLPQQVFDVQAVLECVQRERITVLPGPPTLYQSLLAHPQRSEFDLSSLRVAVTGAAAI
PVEMIHRMRDELGFATIVTAYGLTEVCGFATICRSGDSAELVANTSGRAMPGVQVRCVGN
SGRSQPANIPGEVQIRGYNLMQGYLNNPEASQEILDADGWLHTGDIGMLDEQGYLRITDR
LKDMFITGGFNVYPAEIEQCLLTYPGVAQAAVIGIPDERLGEVAMAFLLPAPGMEIEQTR
FLAWCREQMANYKVPRRVQVLQKMPINAAGKVTKNVLREWALQPVD