PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PfGW456L13_2593 (565 amino acids)

SeqID: PfGW456L13_2593 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 416605: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PfGW456L13_2593
MDQPSASPQRSYTRGSQDKALLAMTIGQAFDNTVAQYPDGEALVVRHQQLRYTWQQLAEA
ADLHARALLALGLQAGDRLGIWAPNCAQWCISQIATAKIGVILVNINPAYRSSELEYVLK
QSGCQWLVCAGAFKTSNYHAMVQGLVPELAEQSIGKLLSERLPELRGVISLDVQPPSGFL
PWSQLTDLAGGVSTEQLRERQESLHFDQAVNIQYTSGTTGFPKGATLSHYNILNNGYMVG
ESLGLTAADRLVIPVPLYHCFGMVMGNLGCITHGSTMIYPNDAFDPLLTLGTVAEEKATA
LYGVPTMFIAMLDQPQRAGFDLSSLRTGIMAGATCPIEVMRRVISEMHMSEVQIAYGMTE
TSPVSLQTGPSDDLELRVTTVGRTQPQLESKIIDEAGNLVPRGTIGELCTRGYSVMLGYW
NNPEGTADAIDQAGWMHTGDLASMNDEGYVCIAGRNKDMIIRGGENIYPRELEEFFFTHP
AVADVQVIGIPCSRYGEEIVAWIKFHPGHGATEQELQAWCKERIAHFKTPRYFKFVEEFP
MTVTGKIQKFRMREISIEELREKQE

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory