PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PfGW456L13_2613 (371 amino acids)

SeqID: PfGW456L13_2613 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 731052: sn-glycerol-3-phosphate transport ATP-binding protein ugpC]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    7.88
    Cytoplasmic            2.11
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    7.88

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PfGW456L13_2613
MAEIRLQNLAHSYTKTPAGPEDYAIREMDHIWEQGGAYALLGPSGCGKSTLLNIISGLLS
PSQGHVLFDGKAVNNLTPEKRNIAQVFQFPVVYDTMTVFDNLAFPLRNQGMAEARVHSKV
QEIAEVLDLQNLLSKKARNLTADEKQKVSMGRGLVRDDVSAILFDEPLTVIDPHLKWKLR
RKLKQIHEQFNITMVYVTHDQLEASTFADKIAVMYGGQIVQFGTPRELFERPSHTFVGYF
IGSPGMNLIEVQPQPGGVGFASTHLPLSEAMQQRIAESEWKTLKVGIRPEFVHVWDEAFD
DALRAQVVHVEDLGTYKIMTLNLDGVPLKVRLAEDKPVPQGTAYISFPAQWLMVYADEFL
LEANANQEAQP