PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PfGW456L13_2924 (452 amino acids)

SeqID: PfGW456L13_2924 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 121677: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PfGW456L13_2924
MAYDFDLYVIGAGSGGVRAARFAAGFGAKVAVAESRYLGGTCVNVGCVPKKLLVYGAHFA
EDFEQASGFGWGLDEAQFDWPTLIANKDREINRLNGIYRNLLVNSGVTLHEGHAKIVDPH
QVEINGERFTARNILIATGGWPQIPEIPGHEHAISSNQAFFLKELPKRVLVVGGGYIAVE
FAGIFHGLGAKTTLLYRGELFLRGFDGSVRKHLQEELTKRGMDLQFNADIERIDKLADGS
LKVTLKDGRQLEADCVFYATGRRPMLDNLGLENTGVKLDRKGFVEVDELYQTAEPSILAL
GDVIGRVQLTPVALAEGMAVARRLFKPEQYRPVDYKMIPTAVFSLPNIGTVGLTEEEARE
AGHEVQVFESRFRPMKLTLTECQERTLMKLVVDANTDKVLGCHMVGPEAGEIVQGLAIAL
KAGATKRDFDETIGVHPTAAEEFVTMRTPVAG