PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PfGW456L13_2939 (436 amino acids)

SeqID: PfGW456L13_2939 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [12 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          CytoplasmicMembrane           [matched PS50850: MFS Profile - Cytoplasmic Membrane ]
    SCL-BLAST-        CytoplasmicMembrane           [matched 4033491: Inner membrane transport protein yfaV]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PfGW456L13_2939
MTQSAVASQAIADDKNAVYKRITLRLIPFIFICYLFNYLDRVNVGFAKLQMLDALKFSET
VYGLGAGIFFIGYVLCGVPSNLALTKFGPRRWIALMMIAWGTLSTCLLFVTTPTEFYTLR
LFTGAAEAGFFPGVVLYLSQWFPTFRRGRIMALFMSAIPVSGLLGSPFSGWILNHFAAGQ
GGLAGWQWMFLLQGIPTVILGALAYFLLSDSYANAKWLTPFERSVLEADHAQDLANKPKT
TTDSLLAVFKNPAIWAFGLIYFCIQSGVYAINFWLPSIIKNLGFSDNLVIGWLSAIPYLL
AAVFMLMVGRSADLRKERRWHLVVPMLMGALGLLIAVNFAANPAIAILGLTIATMGALTG
LPMFWPVPTALLSAGAAAGGLALINSMGQMAGFLSPYLVGWVKDSTGSTDAALYLLAGVI
VCGSLLALRMTRTLRT

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory