PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PfGW456L13_2943 (395 amino acids)

SeqID: PfGW456L13_2943 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598993: probable aminotransferase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PfGW456L13_2943
MRYSALTQRIAGDGAAAWQIHDRALALREQGVDVLLLSIGDPDFDTPQPIVQAAIGSLLA
GDTHYPAVRGSQGLRDSIARHHRRRSGQAVDAQHVIVFPGAQCAVYSVAQCLLDPGDEVL
VAEPMYVTYEGVFGACGAKVVPVPVRSQNGFRVDPADVAALITPNTRAMLLNSPNNPSGA
SLPLTAWKALAALCIRHDLWLISDEVYSELLFEGEHISPASLPGMAERTATINSLSKSHA
MSGWRVGWVIGPQSLCEHLVNLSLCMLFGIPDFIQNAAQLALDENLPHVAQMREEYRQRR
DLVCASLNLCPGIQAIRPDGGMFVMVDVRQTGLSAQHFAERLLDGYGVSVLAGEAFGPSA
AGHIRIGLVVDRPKLADACRRIVMCVTNMLEGRRA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory