PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PfGW456L13_2949 (430 amino acids)

SeqID: PfGW456L13_2949 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [12 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          CytoplasmicMembrane           [matched PS50850: MFS Profile - Cytoplasmic Membrane ]
    SCL-BLAST-        CytoplasmicMembrane           [matched 4033491: Inner membrane transport protein yfaV]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PfGW456L13_2949
MKTATLATRRWWYIMPIVFITYSLAYLDRANYGFAAASGMAADLMITPGLSSMLGALFFL
GYFFFQVPGAIYAQKHSVKKLIFVSLILWGSLATLTGIVSNAYWLIVIRFMLGVVEAAVM
PAMLIYLCHWFTRAERSRANTFLILGNPVTMLWMSVVSGYLVQHYSWRWMFIVEGLPAVL
WAFIWWRLADDRPSQAKWLNDQEKQDLESALAAEQVGIKAVKNYAEAFRSPKVIILALQF
FCWSIGVYGFVLWLPSILKAGAQMDMVEAGWLSALPYLAAVIGMLLVSWGSDKLQKRKRF
VWPPLLIASIAFYGSYALGAEHFWWSYTLLVIAGACMYAPYGPFFAIIPEILPANVAGGA
MALINSMGALGSFGGSYLVGYLNSSTGSPGASYLLMSGALMLSVVLTVFLKPGASDRERP
TVARPLTAHS

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory