PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PfGW456L13_3042 (436 amino acids)

SeqID: PfGW456L13_3042 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    2.50
    OuterMembrane          2.50
    Periplasmic            2.50
    Extracellular          2.50
    Cytoplasmic            0.00
  Final Prediction:
    Unknown

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PfGW456L13_3042
MQPSVKALLALTCMTLSSVSLGAQTLTIATVNNSDMIRMQKLSKTFEAEHPDIKLNWVVL
EENVLRQRLTTDIATQGGQFDVLTIGMYEAALWGAKGWLEPMKDLPAGYALDDVFASVRE
GLSVKGQLYALPFYAESSITYYRTDLFKDAGLTMPERPTWEQIGEFAAKLNKPEQEQYGI
CLRGKAGWGENIALISTVANAYGARWFDEKWQPEFNGPEWKNALNFYVDTMKKSGPPGAS
SNGFNENLALFNSGKCAIWVDASVAGSFVTDKSQSKVTDHVGFTYAPHQVTDKGSAWLYS
WALAIPTSSKAKDAAKTFSAWATSKEYGALVAEKDGIANVPPGTRASTYSEAYMSAAPFA
RVTLESLKAADPSKPGTRPVPYIGIQLVTIPEFQGIGTQVGKSFSAALIGQTTVDQALAA
AQQTTEREMKRAGYPK