PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PfGW456L13_3090 (384 amino acids)

SeqID: PfGW456L13_3090 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598993: probable aminotransferase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PfGW456L13_3090
MTFDFDQVFDRHNTGSTKWSRYPADVLPMWVADMDFAAPPMIIQALQKRLEHPMVGYSVA
QDDLREAIVADLWNKYAWRVEPQELIFLPGVESGFNMALKALVQAPQNVVVQVPNYPPLR
HAPGHWGLNKVELNFDAQADGTYTTPLDTLSQSLQGGGALLLSNPHNPLGKAFPRTELQA
IADICLEHDAWIISDEIHAELCFDGRQHIPMATLSPQVAQRTITLMSASKAYNIAGLKTS
FMIIQDRHLREKVNHARCGMVDSVNPLGMEATRVAYSEAAPWLAELKVYLQGNRDYLAEA
VHTRLPGITMNLPQSTYLAWLDCTALGLDDPQQFFLEQAKVGLSAGLDFGDGCKQFVRLN
FGCPRSLLEEGIARMERSLRHLKA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory