PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PfGW456L13_3206 (396 amino acids)

SeqID: PfGW456L13_3206 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598993: probable aminotransferase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PfGW456L13_3206
MRFSDLTQRIAGDGAAAWDIHYRALALREQGEDILLLSVGDPDFDTPQPIVQGAIDSLLN
GNTHYAEVRGKRALREAIARRHQQRSGQSVSADQVTVLAGAQCALFSVAQCVLNPGDEVI
VAEPMYVTYEAVFGACGAVVVPVPVRSENGFRVLPEDVAARITPRTRALALNSPHNPSGA
SLPRSTWAALAELCIAHDLWLISDEVYSELLFEGEHVSPASLPGMAERTATLNSLSKSHA
MTGWRVGWVVAPPSLAAHLENLALCMLYGSPDFIQDAAVVALESNLPELEAMREAYRQRR
DLVCDSLADCPGVRALKPDGGMFVMLDIRQTGLSAQAFADRLLDRHGVSVLAGEAFGPSA
AGHIRLGLVVGAEPLRDACQRIARCAQELMEAQVHA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory